Other Stuff

Options for mask volumes.

The voxel masks do not have to be voxel-to-voxel matched with the data. The world coordinate system is used to determine if a point from is within the masked area or not.

-model\_mask

Specifies a binary mask file for the target. Voxels of the target model that map to zero valued voxels in the mask are masked OUT of the data (these points will NOT participate in the fit).

-source\_mask

Specifies a binary mask file for the source.

Interpolation options.

-trilinear

Do trilinear interpolation.

-tricubic

Do tricubic interpolation.

-nearest\_neighbour

Do nearest neighbour interpolation.

Other flags:

-verbose

levels of verbose messages, default = 1 (0=quiet, 1=show optimization info 2=show objective function info 3=show fitting summary (of optimization and objective function)).

-debug

show debugging information during the run.