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fMRI Studies at the McConnell Brain Imaging Centre



This website was designed to help researchers who perform fMRI studies at the Brain Imaging Centre (BIC) of McGill University. Here you will find information about the BIC facilities, stimulus presentation and subject monitoring equipment, and an introduction on how to analyze your collected fMRI data.

Contents

fMRI Resources Available

MR Imaging Facilities

Stimulus Presentation and Subject Monitoring

Image Transfers from the Scanner

Planning and Executing The Study

Initial Considerations

Booking Scanner Time

Safety Issues

MR Safety Documents - Adobe PDF format

Scanning Procedure

Analyzing the Data

Finding the Transferred Images

Finding the analysis software

Setting up a Working Directory

Preprocessing the Data

Generating an Activation Map

Thresholding the tstat image

Averaging Data from Multiple Subjects or Multiple Sessions

  1. Same subject, multiple sessions

  2. Multiple subjects

Displaying the Results

Summary of Analysis Steps

Additional Usage Notes and Tips

fMRI Related Frequently Asked Questions


fmri-announce Mailing List Information

If you would like to get information about changes in fMRI protocols, software updates for data processing, and MR scanner related announcements, you can subscribe to the fmri-announce mailing list. Simply send an e-mail to

fmri-announce email graphic

The subject line should be left blank and in the body of your mail you should put

subscribe fmri-announce <your e-mail address>

If you have a signature block at the end of your mail, the mailing list software may mistakenly believe each line of your signature is a command; you will then receive error messages.  To keep this from happening, either put a line starting with a hyphen ("-") before your signature, or put a line with just the word "end" in it.  This will stop the mailing list software from processing your signature as bad commands.



If you have any questions or comments, please e-mail Michael Ferreira at: Mike's e-mail address

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