NAME
tensor_preprocess.pl - pre-processing of diffusion images
SYNOPSIS
tensor_preprocess.pl -input <dti_series.mnc> -anat <t1_anatomical.mnc>
DESCRIPTION
tensor_preprocess.pl will preprocess diffusion images: including registration to an anatomical, transformation of diffusion directions (
transform_diff_dirs)(due to the registration) and generation of a brain mask (mincbet). It is assumed that there is no motion between the acquisitions of the various directions (but techniques to do this type of registration will eventually be implemented). You can modify the script to your needs.
OPTIONS
-input input DTI series (4D)
-anat anatomical image
Generic options
-help: Print summary of command-line options and abort.