The java applet should show four columns of data. The first shows Rhesus SUBJECT_NAME in its native space. The second contains the MNI MRI rhesus steretaxic model. It was created by non-linearly registering and average MRI data from 7 rhesus macaques. The rightmost column contains labels from the CoCoMac application. These labels come orginally from the Paxinos Atlas and were nonlinearly warped to fit on the MNI MRI rhesus steretaxic model. The third column contains a blend of the second and rightmost columns which is controlled by the slider at the base of the column.
The MNI MRI rhesus stereotaxic coordinates (X,Y,Z) are displayed in the first row below the volumes. The second row displays the native rhesus coordinates (Xnat,Ynat,Znat), and the third row displays the paxinos atlas coordinates (fig,lat,sup). 'fig' is the figure #, 'lat' is the medial to lateral distance on the figure, and 'sup' is the inferior/superior distance - measured using the ruler on the left side. The fourth row shows the atlas label corresponding to the cursor's position (L), and the intensity (I).
One can use the left most mouse button to click on any image, in any column, and the other three images will be updated with the appropriate position (and across the columns too, if sync mode is on). You can also hold the middle/rocker mouse button down while moving up or down, to pan through the image plane.
NOTE: In the JIV window, you can "right-click" to get popup menus. One useful aspect is to turn on the 'sync all cursors' option so that all three column are updated with each left mouse click.
When looking at the images, remember that left is left and right is right!
On some platforms, the images are not displayed properly at startup. Simply click in the grey or black images to update the screen. (For example, clicking on a sagittal image will update the coronal and transverse images.)
NOTE: On some platforms, the viewer will not load more than once. The browser must be restarted before reloading this page!
For information on the JIV, the Java Image Viewer, please read:
Last modified: Tues June 30 2009