Q: Hi, Sorry for a newbee question, but no luck Google-ing this: Does anyone have a link or howto on skull stripping MRIs in .mnc format? Bouncing back and forth between mnc, nifti and analyze etc often gets coordinate spaces confused, particularly with batch processing in pipelines. Any help would be much appreciated!
http://www.bic.mni.mcgill.ca/pipermail/minc-users/2008-December/002304.html

A: f course, there is a tool. It is basically FSL bet with a minc interface and a few other modifications. It is available on demand, thus I don’t think I want to post the link here. I will verify tomorrow and send you the link in a private communication. Remember that this tool is based on FSL bet, so you will have to acknowledge Stephen Smith’s paper in your work.