http://www.bic.mni.mcgill.ca/users/crisco/
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[ last modified: ]
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Chris A. Cocosco
- Email:
- crisco@bic.mni.mcgill.ca
Research (at McGill):
1. Brain tissue classification from anatomical MR images
I developed a novel automatic method that is robust against anatomical
variability and pathology. The method uses feature space proximity
graphs, and does not make any assumptions about the tissue MRI
intensity distributions. [see Publications]
Related:
"Editing Incorrect Training Samples Using Proximity Graphs":
a Web tutorial.
2. Remote (WWW) 3D image data access and visualization
- G. Kedenburg, C.A. Cocosco, U. Koethe, W.J. Niessen,
E.P.A. Vonken, M.A. Viergever :
"Automatic Cardiac MRI Myocardium Segmentation Using
Graphcut"
SPIE Medical Imaging, San Diego, CA, Feb 2006.
- H. Vrooman, C.A. Cocosco, R. Stokking, M. Breteler, W. Aarden,
A. Ikram, W. Niessen :
"Multi-spectral MRI brain tissue segmentation: Training
on manually labeled scans versus automatic atlas-based training on
single subject"
SPIE Medical Imaging, San Diego, CA, Feb 2006.
- H. Vrooman, C.A. Cocosco, R. Stokking, M. Breteler, W. Niessen,
et al. :
"Multi-Spectral MRI Brain Tissue Classification Using the
k-Nearest-Neighbor Algorithm: Training on Manually Labeled
Subjects versus Automatic Atlas-Based Training on a Single
Subject"
RSNA, Chicago, IL, 2005.
- C.A. Cocosco, W.J. Niessen, T. Netsch, E.P.A. Vonken,
M.A. Viergever : "Automatic image-driven segmentation of
cardiac ventricles in cine anatomical MRI"
Paper 5909-59, in "Applications of Digital Image Processing XXVIII", SPIE Optics & Photonics Symposium, 31 July - 4 August 2005, San Diego, CA [Invited talk].
- C.A. Cocosco, T. Netsch, J. Senegas, D. Bystrov, W.J. Niessen,
M.A. Viergever:
"Automatic Cardiac Region-of-Interest Computation in Cine 3D Structural MRI"
Conference on Computer Assisted Radiology and Surgery (CARS), Chicago,
Jun. 2004.
- J. Senegas, T. Netsch, C.A. Cocosco, G. Lund, A. Stork :
"Segmentation of medical images with a shape and motion model: a Bayesian perspective"
Computer Vision Approaches to Medical Image Analysis (CVAMIA) and
Mathematical Methods in Biomedical Image Analysis (MMBIA)
Workshop, Prague, May. 2004.
- J. Senegas, C.A. Cocosco, T. Netsch :
"Model-based segmentation of cardiac MRI cine sequences: A Bayesian formulation"
Proceedings of SPIE Medical Imaging Conference, San Diego,
Feb. 2004.
- A.G. Chandler, T. Netsch, C.A. Cocosco, J.A. Schnabel, D.J. Hawkes
:
"Slice-to-volume registration using mutual information
between probabilistic image classifications"
Proceedings of SPIE Medical Imaging Conference, San Diego,
Feb. 2004.
- C.A. Cocosco, A.P. Zijdenbos, A.C. Evans :
"A Fully Automatic and Robust Brain MRI Tissue Classification Method"
Medical Image Analysis, Vol 7, Issue 4, Dec 2003, pp513-527.
- preprint:
[pdf]
- Note: The version that appeared in the journal contained a
mistake: the top and bottom part of Fig.4 were
interchanged. However, the above preprint is correct.
- C.A. Cocosco, A.P. Zijdenbos, A.C. Evans :
"Automatic Generation of Training Data for Brain
Tissue Classification from MRI"
Fifth International Conference on Medical Image Computing and
Computer-Assisted Intervention (MICCAI 2002), Tokyo, Japan,
September 25-28, 2002.
- C.A. Cocosco, A.P. Zijdenbos, N. Kabani, A.C. Evans :
"A Comparative Study of Model-Based Brain MRI Tissue
Classification Methods"
Technical Report, Brain Imaging Centre / Montreal Neurological
Institute, June 2002.
- C.A. Cocosco :
"Automatic Generation of Training Data for Brain
Tissue Classification from MRI"
Master's Thesis, McGill University, Montreal, 2002.
- C.A. Cocosco, A.C. Evans :
"Java Internet Viewer: A WWW Tool for Remote 3D Medical Image Data Visualization and
Comparison"
Fourth International Conference on Medical Image Computing and
Computer-Assisted Intervention (MICCAI 2001), Utrecht, The
Netherlands, 14-17 October 2001.
- C.A. Cocosco, A.C. Evans :
"Java Internet Viewer: A WWW Tool for Remote 3D Medical Image Data Visualization and
Comparison"
Technical Report, Brain Imaging Centre / Montreal Neurological
Institute, March 2001.
- C.A. Cocosco, V. Kollokian, R.K.-S. Kwan, A.C. Evans :
"BrainWeb: Online Interface to a 3D MRI Simulated Brain Database"
NeuroImage, vol.5, no.4, part 2/4, S425, 1997 -- Proceedings of 3-rd International Conference on Functional Mapping of the Human Brain, Copenhagen, May 1997.
Some useful Web links:
E-library resources (some have access restricted by IP address):
Chris Cocosco
<crisco@bic.mni.mcgill.ca>
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